OSG logo
OSG logo
Contact
PAThPelican PlatformIRIS-HEP
All projects
OSPool Project

UMontana_Roy

Principal Investigator

Amitava Roy

Organization

University of Montana

Field of Science

Biological and Biomedical Sciences

Description

1) Virtual screening - Computational or virtual screening of molecules can accelerate drug development programs. We have developed a virtual screening method to screen billions of molecules for hit generation against specific protein targets. We want to develop the method further and also want to use the method to develop hits against specific proteins, such as the one announced in this competition. https://cache-challenge.org/ 2) Entropy from surface properties - Calculating entropy is tricky, as, in principle, it requires sampling vast phase space to count all available microstates. We are developing a method for calculating the entropy of small molecules from their surface properties. Such a method will benefit computational chemistry, especially the virtual screening community. https://www.biorxiv.org/content/10.1101/2021.05.26.445640v1.abstract 3) Transferability of polygenic risk scores (PRS) - PRS is a useful tool to estimate one's health condition propensity from their genetic makeup. Historically, most of the PRS models were built from European ancestry samples. We are working on a network model to identify the best way to transfer a PRS model from the population it was developed for to another population not included in the study.

1,334,653

Jobs Ran

723,790

CPU Core Hours

9,941

GPU Hours

76

Contributing Institutions

9,636,714

OSDF Objects Transferred

2 PB

OSDF Bytes Transferred

Contributing Institutions

Jobs by Institution
  • University of Chicago — 237,490 (17.8%)
  • Purdue University West Lafayette — 191,410 (14.3%)
  • University of Wisconsin–Madison — 166,595 (12.5%)
  • University of Utah — 131,940 (9.9%)
  • Indiana University — 54,470 (4.1%)
  • Montana State University — 48,500 (3.6%)
  • Clemson University — 40,917 (3.1%)
  • Duke University — 38,325 (2.9%)
  • University of Connecticut — 37,202 (2.8%)
  • Lehigh University — 26,714 (2.0%)
  • University of Missouri — 26,187 (2.0%)
  • Pennsylvania State University — 23,257 (1.7%)
  • University of Illinois Urbana-Champaign — 22,946 (1.7%)
  • University of California, Merced — 19,685 (1.5%)
  • American Museum of Natural History — 16,508 (1.2%)
  • Other — 252,507 (18.9%)
Map of Contributing Institutions