Workflow Tutorials

OSPool workflow tutorials on Github

All of the OSG provided tutorials are available as repositories on Github. These tutorials are tested regularly and should work as is, but if you experience any issues please contact us.

Available tutorials

The following tutorials are available and are compatible with OSG-provided Access Points:

Currently available tutorials:
R ...................... Estimate Pi using the R programming language
R-addlibSNA ............ Shows how to add R external libraries for the R jobs
ScalingUp-Python ....... Scaling up compute resources - Python example to optimize a function on grid points
blast-split ............ How to run BLAST on the OSPool by splitting a large input file
fastqc ................. How to run FastQC on the OSPool
dagman-wordfreq ........ DAGMan based wordfreq example
error101 ............... Use condor_q -better-analyze to analyze stuck jobs
matlab-HelloWorld ...... Creating standalone MATLAB application - Hello World 
osg-locations .......... Tutorial based on OSPool location exercise from the User School
pegasus ................ An introduction to the Pegasus job workflow manager
quickstart ............. How to run your first OSPool job
scaling ................ Learn to steer jobs to particular resources
scaling-up-resources ... A simple multi-job demonstration
software ............... Software access tutorial
tensorflow-matmul ...... Tensorflow math operations as a singularity container job on the OSPool - matrix multiplication

Install and setup a tutorial

On an OSPool Access Point, type the following to download a tutorial's materials:

$ git clone https://github.com/OSGConnect/<tutorial-name>

This command will clone the tutorial repository to your current working directory. cd to the repository directory and follow the steps described in the readme.md file. Alternatively, you can view the readme.md file at the tutorial's corresponding GitHub page.